You don't need to read long manual pages for a simple task. This manual page collects the most common pak use cases.
Package installation
Install a package from GitHub
pak::pkg_install("tidyverse/tibble")#> #> → Will update 2 packages. #> → All 2 packages (0 B) are cached. #> + tibble 3.1.8 → 3.1.8.9001 👷🏾🔧 (GitHub: 44d905f) #> + vctrs 0.4.1 → 0.4.1.9000 👷🏻♂️🔧 (GitHub: 5191dfc) #> ℹ No downloads are needed, 2 pkgs are cached #> ✔ Got vctrs 0.4.1.9000 (source) (2.07 MB) #> ✔ Got tibble 3.1.8.9001 (source) (1.34 MB) #> ℹ Packaging vctrs 0.4.1.9000 #> ✔ Packaged vctrs 0.4.1.9000 (1.3s) #> ℹ Building vctrs 0.4.1.9000 #> ✔ Built vctrs 0.4.1.9000 (9.7s) #> ✔ Installed vctrs 0.4.1.9000 (github::r-lib/vctrs@5191dfc) (29ms) #> ℹ Packaging tibble 3.1.8.9001 #> ✔ Packaged tibble 3.1.8.9001 (437ms) #> ℹ Building tibble 3.1.8.9001 #> ✔ Built tibble 3.1.8.9001 (2.5s) #> ✔ Installed tibble 3.1.8.9001 (github::tidyverse/tibble@44d905f) (42ms) #> ✔ 1 pkg + 10 deps: kept 8, upd 2, dld 2 (NA B) [17.7s]
Install a package from a URL
pak::pkg_install("url::https://cran.r-project.org/src/contrib/Archive/tibble/tibble_3.1.7.tar.gz")#> #> → Will install 1 package. #> → Will update 1 package. #> → All 2 packages (38.65 kB) are cached. #> + ellipsis 0.3.2 #> + tibble 3.1.8.9001 → 3.1.7 👷🏻♀️🔧 #> ℹ No downloads are needed, 2 pkgs (38.65 kB) are cached #> ✔ Installed ellipsis 0.3.2 (13ms) #> ℹ Building tibble 3.1.7 #> ✔ Built tibble 3.1.7 (2.5s) #> ✔ Installed tibble 3.1.7 (24ms) #> ✔ 1 pkg + 11 deps: kept 9, upd 1, added 1 [3.4s]
Package updates
Update a package
pak::pkg_install("tibble")#> #> → Will update 1 package. #> → The package (724.32 kB) is cached. #> + tibble 3.1.7 → 3.1.8 #> ℹ No downloads are needed, 1 pkg (724.32 kB) is cached #> ✔ Installed tibble 3.1.8 (29ms) #> ✔ 1 pkg + 10 deps: kept 9, upd 1 [572ms]
Update all dependencies of a package
pak::pkg_install("tibble", upgrade = TRUE)#> #> → Will update 1 package. #> → The package (495.82 kB) is cached. #> + cli 3.3.0 → 3.4.0 👷🏼🔧 #> ℹ No downloads are needed, 1 pkg (495.82 kB) is cached #> ℹ Building cli 3.4.0 #> ✔ Built cli 3.4.0 (4.6s) #> ✔ Installed cli 3.4.0 (35ms) #> ✔ 1 pkg + 10 deps: kept 10, upd 1 [5.2s]
Dependency lookup
Dependencies of a CRAN or Bioconductor package
pak::pkg_deps("tibble")#> # A data frame: 11 × 32 #> ref type direct direc…¹ status package version license needs…² prior…³ #> <chr> <chr> <lgl> <lgl> <chr> <chr> <chr> <chr> <lgl> <chr> #> 1 fansi stan… FALSE FALSE OK fansi 1.0.3 GPL-2 … FALSE NA #> 2 glue stan… FALSE FALSE OK glue 1.6.2 MIT + … FALSE NA #> 3 lifecycle stan… FALSE FALSE OK lifecy… 1.0.1 MIT + … FALSE NA #> 4 magrittr stan… FALSE FALSE OK magrit… 2.0.3 MIT + … FALSE NA #> 5 pillar stan… FALSE FALSE OK pillar 1.8.1 MIT + … FALSE NA #> 6 pkgconfig stan… FALSE FALSE OK pkgcon… 2.0.3 MIT + … FALSE NA #> 7 rlang stan… FALSE FALSE OK rlang 1.0.5 MIT + … FALSE NA #> 8 tibble stan… TRUE TRUE OK tibble 3.1.8 MIT + … FALSE NA #> 9 utf8 stan… FALSE FALSE OK utf8 1.2.2 Apache… FALSE NA #> 10 vctrs stan… FALSE FALSE OK vctrs 0.4.1 MIT + … FALSE NA #> 11 cli stan… FALSE FALSE OK cli 3.4.0 MIT + … TRUE NA #> # … with 22 more variables: md5sum <chr>, sha256 <chr>, filesize <int>, #> # built <chr>, platform <chr>, rversion <chr>, repotype <chr>, repodir <chr>, #> # target <chr>, deps <list>, mirror <chr>, sources <list>, remote <list>, #> # error <list>, metadata <list>, dep_types <list>, params <list>, #> # sysreqs <chr>, cache_status <chr>, lib_status <chr>, old_version <chr>, #> # new_version <chr>, and abbreviated variable names ¹directpkg, #> # ²needscompilation, ³priority
Dependency tree of a CRAN / Bioconductor package
pak::pkg_deps_tree("tibble")#> tibble 3.1.8 ✨ #> ├─fansi 1.0.3 ✨ #> ├─lifecycle 1.0.1 ✨ #> │ ├─glue 1.6.2 ✨ #> │ └─rlang 1.0.5 ✨ #> ├─magrittr 2.0.3 ✨ #> ├─pillar 1.8.1 ✨ #> │ ├─cli 3.4.0 ✨👷♀️🔧 #> │ ├─fansi #> │ ├─glue #> │ ├─lifecycle #> │ ├─rlang #> │ ├─utf8 1.2.2 ✨ #> │ └─vctrs 0.4.1 ✨ #> │ ├─cli #> │ ├─glue #> │ └─rlang #> ├─pkgconfig 2.0.3 ✨ #> ├─rlang #> └─vctrs #> #> Key: ✨ new | 👷♀️ build | 🔧 compile
Dependency tree of a package on GitHub
pak::pkg_deps_tree("tidyverse/tibble")#> tidyverse/tibble 3.1.8.9001 ✨👷🏼♂️🔧 #> ├─fansi 1.0.3 ✨ #> ├─lifecycle 1.0.1 ✨ #> │ ├─glue 1.6.2 ✨ #> │ └─rlang 1.0.5 ✨ #> ├─magrittr 2.0.3 ✨ #> ├─pillar 1.8.1 ✨ #> │ ├─cli 3.4.0 ✨👷🏼♂️🔧 #> │ ├─fansi #> │ ├─glue #> │ ├─lifecycle #> │ ├─rlang #> │ ├─utf8 1.2.2 ✨ #> │ └─r-lib/vctrs 0.4.1.9000 ✨👷🏼♂️🔧 #> │ ├─cli #> │ ├─glue #> │ └─rlang #> ├─pkgconfig 2.0.3 ✨ #> ├─rlang #> └─r-lib/vctrs #> #> Key: ✨ new | 👷🏼♂️ build | 🔧 compile
Dependency tree of the package in the current directory
pak::local_deps_tree("tibble")#> local::tibble 3.1.8 ✨👷🏻🔧 #> ├─fansi 1.0.3 ✨ #> ├─lifecycle 1.0.1 ✨ #> │ ├─glue 1.6.2 ✨ #> │ └─rlang 1.0.5 ✨ #> ├─magrittr 2.0.3 ✨ #> ├─pillar 1.8.1 ✨ #> │ ├─cli 3.4.0 ✨👷🏻🔧 #> │ ├─fansi #> │ ├─glue #> │ ├─lifecycle #> │ ├─rlang #> │ ├─utf8 1.2.2 ✨ #> │ └─vctrs 0.4.1 ✨ #> │ ├─cli #> │ ├─glue #> │ └─rlang #> ├─pkgconfig 2.0.3 ✨ #> ├─rlang #> └─vctrs #> #> Key: ✨ new | 👷🏻 build | 🔧 compile
(Assuming package is in directory tibble.)
Explain a recursive dependency
pak::pkg_deps_explain("tibble", "rlang")#> tibble -> lifecycle -> rlang #> tibble -> pillar -> lifecycle -> rlang #> tibble -> pillar -> rlang #> tibble -> pillar -> vctrs -> rlang #> tibble -> rlang #> tibble -> vctrs -> rlang
Package development
Install dependencies of local package
pak::local_install_deps()#> ✔ Updated metadata database: 1.42 MB in 5 files. #> ℹ R 4.2 aarch64-apple-darwin20 packages are missing from Bioconductor #> ✔ Updating metadata database ... done #> #> → The package (0 B) is cached. #> ℹ No downloads are needed #> ✔ 10 deps: kept 10 [7.4s]
Install local package
pak::local_install()#> #> → Will update 1 package. #> → The package (0 B) is cached. #> + tibble 3.1.8 → 3.1.8 👷🏻♀️🔧 #> ℹ No downloads are needed, 1 pkg is cached #> ✔ Got tibble 3.1.8 (source) (96 B) #> ℹ Packaging tibble 3.1.8 #> ✔ Packaged tibble 3.1.8 (639ms) #> ℹ Building tibble 3.1.8 #> ✔ Built tibble 3.1.8 (2.2s) #> ✔ Installed tibble 3.1.8 (local) (28ms) #> ✔ 1 pkg + 10 deps: kept 10, upd 1, dld 1 (NA B) [3.9s]
Install all dependencies of local package
pak::local_install_dev_deps()#> #> → Will install 86 packages. #> → Will update 2 packages. #> → Will download 1 CRAN package (1.33 MB), cached: 88 (96.03 MB). #> + askpass 1.1 #> + base64enc 0.1-3 #> + bench 1.1.2 #> + bit 4.0.4 #> + bit64 4.0.5 #> + blob 1.2.3 #> + brio 1.1.3 #> + bslib 0.4.0 #> + cachem 1.0.6 #> + callr 3.7.2 #> + clipr 0.8.0 #> + colorspace 2.0-3 #> + covr 3.6.1 #> + cpp11 0.4.2 #> + crayon 1.5.1 #> + curl 4.3.2 #> + desc 1.4.2 👷🏻 #> + DiagrammeR 1.0.9 #> + diffobj 0.3.5 #> + digest 0.6.29 #> + downloader 0.4 #> + dplyr 1.0.10 ⬇ (1.33 MB) #> + evaluate 0.16 #> + farver 2.1.1 #> + fastmap 1.1.0 #> + formattable 0.2.1 #> + fs 1.5.2 #> + generics 0.1.3 #> + ggplot2 3.3.6 #> + gridExtra 2.3 #> + gtable 0.3.1 #> + highr 0.9 #> + hms 1.1.2 #> + htmltools 0.5.3 #> + htmlwidgets 1.5.4 #> + httr 1.4.4 #> + igraph 1.3.4 #> + influenceR 0.1.0.1 #> + isoband 0.2.5 #> + jquerylib 0.1.4 #> + jsonlite 1.8.0 #> + knitr 1.40 #> + labeling 0.4.2 #> + lazyeval 0.2.2 #> + lubridate 1.8.0 #> + MASS 7.3-57 → 7.3-58.1 #> + memoise 2.0.1 #> + mime 0.12 #> + mockr 0.2.0 #> + munsell 0.5.0 #> + nlme 3.1-157 → 3.1-159 #> + nycflights13 1.0.2 #> + openssl 2.0.2 #> + pkgbuild 1.3.1 #> + pkgload 1.3.0 #> + praise 1.0.0 #> + prettyunits 1.1.1 #> + processx 3.7.0 #> + profmem 0.6.0 #> + ps 1.7.1 #> + purrr 0.3.4 #> + R6 2.5.1 #> + rappdirs 0.3.3 #> + RColorBrewer 1.1-3 #> + readr 2.1.2 #> + rematch2 2.1.2 #> + rex 1.2.1 #> + rmarkdown 2.16 #> + rprojroot 2.0.3 #> + rstudioapi 0.14 #> + sass 0.4.2 #> + scales 1.2.1 #> + stringi 1.7.8 #> + stringr 1.4.1 #> + sys 3.4 #> + testthat 3.1.4 #> + tidyr 1.2.1 👷🏿🔧 #> + tidyselect 1.1.2 #> + tinytex 0.41 #> + tzdb 0.3.0 #> + viridis 0.6.2 #> + viridisLite 0.4.1 #> + visNetwork 2.1.0 #> + vroom 1.5.7 #> + waldo 0.4.0 #> + withr 2.5.0 #> + xfun 0.32 #> + yaml 2.3.5 #> ℹ Getting 1 pkg (1.33 MB), 87 (96.03 MB) cached #> ✔ Got tidyr 1.2.1 (source) (746.06 kB) #> ✔ Got gtable 0.3.1 (aarch64-apple-darwin20) (159.19 kB) #> ✔ Got dplyr 1.0.10 (aarch64-apple-darwin20) (1.33 MB) #> ℹ Packaging tibble 3.1.8 #> ✔ Installed DiagrammeR 1.0.9 (75ms) #> ✔ Installed MASS 7.3-58.1 (83ms) #> ✔ Installed R6 2.5.1 (89ms) #> ✔ Installed RColorBrewer 1.1-3 (95ms) #> ✔ Installed askpass 1.1 (102ms) #> ✔ Installed base64enc 0.1-3 (106ms) #> ✔ Installed bench 1.1.2 (144ms) #> ✔ Installed bit64 4.0.5 (41ms) #> ✔ Installed bit 4.0.4 (95ms) #> ✔ Installed blob 1.2.3 (125ms) #> ✔ Installed brio 1.1.3 (58ms) #> ✔ Installed cachem 1.0.6 (15ms) #> ✔ Installed callr 3.7.2 (20ms) #> ✔ Installed clipr 0.8.0 (38ms) #> ✔ Installed bslib 0.4.0 (165ms) #> ✔ Packaged tibble 3.1.8 (597ms) #> ✔ Installed colorspace 2.0-3 (67ms) #> ✔ Installed covr 3.6.1 (53ms) #> ✔ Installed cpp11 0.4.2 (59ms) #> ✔ Installed crayon 1.5.1 (39ms) #> ✔ Installed curl 4.3.2 (41ms) #> ✔ Installed diffobj 0.3.5 (61ms) #> ✔ Installed digest 0.6.29 (39ms) #> ✔ Installed downloader 0.4 (27ms) #> ✔ Installed dplyr 1.0.10 (25ms) #> ✔ Installed evaluate 0.16 (12ms) #> ✔ Installed farver 2.1.1 (23ms) #> ✔ Installed fastmap 1.1.0 (14ms) #> ✔ Installed formattable 0.2.1 (35ms) #> ✔ Installed fs 1.5.2 (20ms) #> ✔ Installed generics 0.1.3 (12ms) #> ✔ Installed ggplot2 3.3.6 (35ms) #> ✔ Installed gridExtra 2.3 (18ms) #> ✔ Installed gtable 0.3.1 (15ms) #> ✔ Installed highr 0.9 (14ms) #> ✔ Installed hms 1.1.2 (14ms) #> ✔ Installed htmltools 0.5.3 (15ms) #> ✔ Installed htmlwidgets 1.5.4 (20ms) #> ✔ Installed httr 1.4.4 (18ms) #> ✔ Installed igraph 1.3.4 (67ms) #> ✔ Installed influenceR 0.1.0.1 (13ms) #> ✔ Installed isoband 0.2.5 (37ms) #> ✔ Installed jquerylib 0.1.4 (18ms) #> ✔ Installed jsonlite 1.8.0 (40ms) #> ✔ Installed knitr 1.40 (46ms) #> ✔ Installed labeling 0.4.2 (11ms) #> ✔ Installed lazyeval 0.2.2 (14ms) #> ✔ Installed lubridate 1.8.0 (26ms) #> ✔ Installed memoise 2.0.1 (11ms) #> ✔ Installed mime 0.12 (12ms) #> ✔ Installed mockr 0.2.0 (29ms) #> ✔ Installed munsell 0.5.0 (14ms) #> ✔ Installed nlme 3.1-159 (27ms) #> ✔ Installed nycflights13 1.0.2 (18ms) #> ✔ Installed openssl 2.0.2 (33ms) #> ✔ Installed pkgbuild 1.3.1 (11ms) #> ✔ Installed pkgload 1.3.0 (12ms) #> ✔ Installed praise 1.0.0 (30ms) #> ✔ Installed prettyunits 1.1.1 (11ms) #> ✔ Installed processx 3.7.0 (16ms) #> ✔ Installed profmem 0.6.0 (12ms) #> ✔ Installed ps 1.7.1 (14ms) #> ✔ Installed purrr 0.3.4 (17ms) #> ✔ Installed rappdirs 0.3.3 (13ms) #> ✔ Installed readr 2.1.2 (31ms) #> ✔ Installed rematch2 2.1.2 (10ms) #> ✔ Installed rex 1.2.1 (13ms) #> ✔ Installed rmarkdown 2.16 (65ms) #> ✔ Installed rprojroot 2.0.3 (13ms) #> ℹ Building desc 1.4.2 #> ✔ Installed rstudioapi 0.14 (17ms) #> ✔ Installed sass 0.4.2 (36ms) #> ✔ Installed scales 1.2.1 (89ms) #> ✔ Installed stringr 1.4.1 (35ms) #> ✔ Installed sys 3.4 (12ms) #> ✔ Installed testthat 3.1.4 (40ms) #> ✔ Installed stringi 1.7.8 (230ms) #> ✔ Installed tidyselect 1.1.2 (39ms) #> ✔ Installed tinytex 0.41 (30ms) #> ℹ Building tidyr 1.2.1 #> ✔ Installed tzdb 0.3.0 (138ms) #> ✔ Installed viridisLite 0.4.1 (41ms) #> ✔ Installed viridis 0.6.2 (42ms) #> ✔ Installed waldo 0.4.0 (28ms) #> ✔ Installed visNetwork 2.1.0 (98ms) #> ✔ Installed vroom 1.5.7 (89ms) #> ✔ Installed withr 2.5.0 (82ms) #> ✔ Installed xfun 0.32 (115ms) #> ✔ Installed yaml 2.3.5 (51ms) #> ✔ Built desc 1.4.2 (1.5s) #> ✔ Installed desc 1.4.2 (15ms) #> ✔ Built tidyr 1.2.1 (4.4s) #> ✔ Installed tidyr 1.2.1 (19ms) #> ✔ 103 deps: kept 15, upd 2, added 86, dld 3 (2.23 MB) [10.4s]
Repositories
List current repositories
pak::repo_get()#> # A data frame: 5 × 5 #> name url type r_ver…¹ bioc_…² #> * <chr> <chr> <chr> <chr> <chr> #> 1 CRAN https://cloud.r-project.org cran * NA #> 2 BioCsoft https://bioconductor.org/packages/3.15/bi… bioc 4.2.1 3.15 #> 3 BioCann https://bioconductor.org/packages/3.15/da… bioc 4.2.1 3.15 #> 4 BioCexp https://bioconductor.org/packages/3.15/da… bioc 4.2.1 3.15 #> 5 BioCworkflows https://bioconductor.org/packages/3.15/wo… bioc 4.2.1 3.15 #> # … with abbreviated variable names ¹r_version, ²bioc_version
Add custom repository
#> # A data frame: 6 × 5 #> name url type r_ver…¹ bioc_…² #> * <chr> <chr> <chr> <chr> <chr> #> 1 CRAN https://cloud.r-project.org cran * NA #> 2 rhub https://r-hub.r-universe.dev cran… * NA #> 3 BioCsoft https://bioconductor.org/packages/3.15/bi… bioc 4.2.1 3.15 #> 4 BioCann https://bioconductor.org/packages/3.15/da… bioc 4.2.1 3.15 #> 5 BioCexp https://bioconductor.org/packages/3.15/da… bioc 4.2.1 3.15 #> 6 BioCworkflows https://bioconductor.org/packages/3.15/wo… bioc 4.2.1 3.15 #> # … with abbreviated variable names ¹r_version, ²bioc_version
Remove custom repositories
#> # A data frame: 5 × 5 #> name url type r_ver…¹ bioc_…² #> * <chr> <chr> <chr> <chr> <chr> #> 1 CRAN https://cloud.r-project.org cran * NA #> 2 BioCsoft https://bioconductor.org/packages/3.15/bi… bioc 4.2.1 3.15 #> 3 BioCann https://bioconductor.org/packages/3.15/da… bioc 4.2.1 3.15 #> 4 BioCexp https://bioconductor.org/packages/3.15/da… bioc 4.2.1 3.15 #> 5 BioCworkflows https://bioconductor.org/packages/3.15/wo… bioc 4.2.1 3.15 #> # … with abbreviated variable names ¹r_version, ²bioc_version
Keeps only CRAN and (by default) Bioconductor.
Time travel using RSPM
#> # A data frame: 5 × 5 #> name url type r_ver…¹ bioc_…² #> * <chr> <chr> <chr> <chr> <chr> #> 1 CRAN https://packagemanager.rstudio.com/all/11… cran * NA #> 2 BioCsoft https://bioconductor.org/packages/3.15/bi… bioc 4.2.1 3.15 #> 3 BioCann https://bioconductor.org/packages/3.15/da… bioc 4.2.1 3.15 #> 4 BioCexp https://bioconductor.org/packages/3.15/da… bioc 4.2.1 3.15 #> 5 BioCworkflows https://bioconductor.org/packages/3.15/wo… bioc 4.2.1 3.15 #> # … with abbreviated variable names ¹r_version, ²bioc_version
Time travel using MRAN
#> # A data frame: 5 × 5 #> name url type r_ver…¹ bioc_…² #> * <chr> <chr> <chr> <chr> <chr> #> 1 CRAN https://cran.microsoft.com/snapshot/2022-… cran * NA #> 2 BioCsoft https://bioconductor.org/packages/3.15/bi… bioc 4.2.1 3.15 #> 3 BioCann https://bioconductor.org/packages/3.15/da… bioc 4.2.1 3.15 #> 4 BioCexp https://bioconductor.org/packages/3.15/da… bioc 4.2.1 3.15 #> 5 BioCworkflows https://bioconductor.org/packages/3.15/wo… bioc 4.2.1 3.15 #> # … with abbreviated variable names ¹r_version, ²bioc_version
Caches
Inspect metadata cache
pak::meta_list()#> ✔ Updated metadata database: 4.51 MB in 8 files. #> ℹ R 4.2 aarch64-apple-darwin20 packages are missing from Bioconductor #> ✔ Updating metadata database ... done #> # A data frame: 41,614 × 32 #> package version depends sugge…¹ license imports linki…² archs enhan…³ os_type #> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> #> 1 A3 1.0.0 R (>= … random… GPL (>… NA NA NA NA NA #> 2 AATtoo… 0.0.1 R (>= … NA GPL-3 magrit… NA NA NA NA #> 3 ABACUS 1.0.0 R (>= … rmarkd… GPL-3 ggplot… NA NA NA NA #> 4 ABC.RAP 0.9.0 R (>= … knitr,… GPL-3 graphi… NA NA NA NA #> 5 ABCana… 1.2.1 R (>= … NA GPL-3 plotrix NA NA NA NA #> 6 ABCopt… 0.15.0 NA testth… MIT + … Rcpp, … Rcpp ABCo… NA NA #> 7 ABCp2 1.2 MASS NA GPL-2 NA NA NA NA NA #> 8 ABHgen… 1.0.1 NA knitr,… GPL-3 ggplot… NA NA NA NA #> 9 ABPS 0.3 NA testth… GPL (>… kernlab NA NA NA NA #> 10 ACA 1.1 R (>= … NA GPL graphi… NA NA NA NA #> # … with 41,604 more rows, 22 more variables: priority <chr>, #> # license_is_foss <chr>, license_restricts_use <chr>, repodir <chr>, #> # rversion <chr>, platform <chr>, needscompilation <chr>, ref <chr>, #> # type <chr>, direct <lgl>, status <chr>, target <chr>, mirror <chr>, #> # sources <list>, filesize <int>, sha256 <chr>, sysreqs <chr>, built <chr>, #> # published <dttm>, deps <list>, md5sum <chr>, path <chr>, and abbreviated #> # variable names ¹suggests, ²linkingto, ³enhances
Update metadata cache
pak::meta_update()#> ✔ Updated metadata database: 27.10 kB in 4 files. #> ℹ R 4.2 aarch64-apple-darwin20 packages are missing from Bioconductor #> ✔ Updating metadata database ... done
Clean metadata cache
pak::meta_clean(force = TRUE)
pak::meta_summary()#> $cachepath #> [1] "/Users/gaborcsardi/Library/Caches/org.R-project.R/R/pkgcache/_metadata" #> #> $current_db #> [1] "/Users/gaborcsardi/Library/Caches/org.R-project.R/R/pkgcache/_metadata/pkgs #> -9e6361fdc9.rds" #> #> $raw_files #> character(0) #> #> $db_files #> character(0) #> #> $size #> [1] 0 #>
Inspect package cache
pak::cache_list()#> # A data frame: 1,873 × 11 #> fullpath path package url etag sha256 version platf…¹ built vigne…² #> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> #> 1 /Users/gaborc… src/… pak file… NA 4e451… 0.2.0.… source NA NA #> 2 /Users/gaborc… src/… pak NA NA NA 0.2.0.… aarch6… TRUE FALSE #> 3 /Users/gaborc… bin/… cli http… "\"1… cbf6f… 3.1.1 aarch6… NA NA #> 4 /Users/gaborc… src/… R7 NA NA 76af5… NA NA FALSE NA #> 5 /Users/gaborc… src/… Annota… http… "\"4… 9c18b… 1.18.0 source NA NA #> 6 /Users/gaborc… bin/… GGally http… "\"1… a8ab8… 2.1.2 aarch6… NA NA #> 7 /Users/gaborc… src/… ensemb… http… "\"3… 0913f… 2.18.3 source NA NA #> 8 /Users/gaborc… src/… bioviz… http… "\"2… 5faa6… 1.42.0 source NA NA #> 9 /Users/gaborc… src/… Annota… http… "\"4… 283e2… 1.56.2 source NA NA #> 10 /Users/gaborc… src/… rtrack… http… "\"3… 0c5e4… 1.54.0 source NA NA #> # … with 1,863 more rows, 1 more variable: rversion <chr>, and abbreviated #> # variable names ¹platform, ²vignettes
View a package cache summary
pak::cache_summary()#> $cachepath #> [1] "/Users/gaborcsardi/Library/Caches/org.R-project.R/R/pkgcache/pkg" #> #> $files #> [1] 1873 #> #> $size #> [1] 6711771702 #>
Clean package cache
pak::cache_clean()Libraries
List packages in a library
pak::lib_status(Sys.getenv("R_LIBS_USER"))#> # A data frame: 531 × 38 #> library package title version depends repos…¹ license needs…² built remot…³ #> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <lgl> <chr> <chr> #> 1 /Users/g… abc Tool… 2.2.1 R (>= … CRAN GPL (>… FALSE R 4.… standa… #> 2 /Users/g… abc.da… Data… 1.0 R (>= … CRAN GPL (>… FALSE R 4.… standa… #> 3 /Users/g… abind Comb… 1.4-5 R (>= … CRAN LGPL (… FALSE R 4.… standa… #> 4 /Users/g… ape Anal… 5.6-2 R (>= … CRAN GPL-2 … TRUE R 4.… standa… #> 5 /Users/g… archive Mult… 1.1.5 R (>= … CRAN MIT + … TRUE R 4.… standa… #> 6 /Users/g… arrow Inte… 8.0.0 R (>= … CRAN Apache… TRUE R 4.… standa… #> 7 /Users/g… asciic… Crea… 2.1.0.… NA NA MIT + … NA R 4.… NA #> 8 /Users/g… askpass Safe… 1.1 NA CRAN MIT + … TRUE R 4.… standa… #> 9 /Users/g… assert… Easy… 0.2.1 NA CRAN GPL-3 FALSE R 4.… standa… #> 10 /Users/g… async Asyn… 0.0.0.… R (>= … NA MIT + … NA R 4.… NA #> # … with 521 more rows, 28 more variables: remotepkgref <chr>, remoteref <chr>, #> # remoterepos <chr>, remotepkgplatform <chr>, remotesha <chr>, imports <chr>, #> # suggests <chr>, linkingto <chr>, remotes <chr>, enhances <chr>, #> # biocviews <chr>, remoteurl <chr>, priority <chr>, remotehost <chr>, #> # remoterepo <chr>, remoteusername <chr>, remoteetag <chr>, #> # remotepackaged <chr>, md5sum <chr>, platform <chr>, sysreqs <chr>, #> # ref <chr>, type <chr>, status <chr>, rversion <chr>, sources <list>, …
Pass the directory of the library as the argument.