pak uses the repos
option, see options()
. It also automatically
adds a CRAN mirror if none is set up, and the correct version of the
Bioconductor repositories. See the cran_mirror
and bioc
arguments.
Usage
repo_get(r_version = getRversion(), bioc = TRUE, cran_mirror = NULL)
Arguments
- r_version
R version to use to determine the correct Bioconductor version, if
bioc = TRUE
.- bioc
Whether to automatically add the Bioconductor repositories to the result.
- cran_mirror
CRAN mirror to use. Leave it at
NULL
to use the mirror ingetOption("repos")
or an automatically selected one.
Examples
repo_get()
#> # A data frame: 5 × 5 #> name url type r_ver…¹ bioc_…² #> * <chr> <chr> <chr> <chr> <chr> #> 1 CRAN https://cloud.r-project.org cran * NA #> 2 BioCsoft https://bioconductor.org/packages… bioc 4.2.2 3.16 #> 3 BioCann https://bioconductor.org/packages… bioc 4.2.2 3.16 #> 4 BioCexp https://bioconductor.org/packages… bioc 4.2.2 3.16 #> 5 BioCworkflows https://bioconductor.org/packages… bioc 4.2.2 3.16 #> # … with abbreviated variable names ¹r_version, ²bioc_version
See also
Other repository functions:
repo_add()
,
repo_status()